This is cut & pasted directly from the Honda Clarity's owners manual:
If any buttons/icons are pressed while using the climate control system in auto, the function of the button/icon that was pressed will take priority. The AUTO indicator will go off, but functions unrelated to the button/icon that was pressed will be controlled automatically.
So that means that if you 1st put it in (AUTO), then if it changes to [Recirculate], you can press the [Fresh] button, & although the (AUTO) button light will go out, it will continue to operate in (AUTO) Mode, except for the spacific function that you changed. I had this same exact issue, until I read this in the manual.