I can clarify with some insight. Beepbeepbeepbeepbeep after closing the closing the door happens when auto-lock is enabled, I'm sure you already know and are referring to this. The Clarity and all cars with smart keys constantly send out radio waves on an odyssey looking for its own key. There's a lot of digital noise out there (flight attendants ask us to turn off our electronics in planes on every flight for a reason but I don't know, I'm not a pilot). To the car, filtering through the mass of civic return replies can often rely on certainty of just a few bits in response. The car will encounter some signals that are just a few bits incorrect or one bit not received. Often - when you're not around.
That said, allow me to make a few assumptions based on your description -- If otherwise -- I can still help with a little more detail. First, I assume this happens most at home. Second, I'll assume you're in your garage, the charge door is opened with the button on the dash, and you start for the charger as fast as inertia finishes closing the door.
Auto-lock is an imperfect convenience and works best in an unobstructed environment. No one would leave their car on a ridgeline, but there wouldn't be much in the way of pinging the key there.
The answer --> your garage probably has some digital interference. If you're gathering your wallet, passport, groceries, and everything from your outing in a bag that will interfere with the key's response. When you shut the door, don't round the crv so quick, maybe wait a second by the door.
Hope this helps,
HR-V